| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Cajon Park Elementary School | 10300 Magnolia Avenue | 737 | K-8 |
| Carlton Hills Elementary School | 9353 Pike Road | 452 | K-8 |
| Carlton Oaks Elementary School | 9353 Wethersfield Road | 683 | K-8 |
| Chet F. Harritt Elementary School | 8120 Arlette Street | 485 | K-8 |
| Hill Creek Elementary School | 9665 Jeremy Street | 600 | K-8 |
| Prospect Avenue Elementary School | 9303 Prospect Avenue | 355 | K-8 |
| Rio Seco Elementary School | 9545 Cuyamaca Street | 610 | K-8 |
| Santana Adult Center School | 9915 North Magnolia | - | - |
| Santana High School | 9915 North Magnolia Avenue | 963 | 9-12 |
| Santee Alternative School | 10250 El Nopal | 33 | K-8 |
| Santee Success Program School | 10280 North Magnolia Avenue | 11 | K-8 |
| Sycamore Canyon Elementary School | 10201 Settle Road | 196 | K-6 |
| West Hills High School | 8756 Mast Boulevard | 1,541 | 9-12 |
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