Well seperating the young once they are born (livebearers) or spit out (such as the mouth brooders, like Cichlids) is something you always have to do. Bigger fish will eat them period. When/if my Yellow Lab Cichlids breed I will strip the young from the female before she spits them out and they have a chance to get eaten. It isn't that hard, I just need to make sure I have a safe place to put the babies, which I do (a small tank).
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