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Amtrak leaves downtown Los Angeles to San Diego, but not through Long Beach.
There are buses - search for the Orange County and San Diego transit web sites to find the bus lines and routes. You'd probably change buses about 3-4 times. I think an OC line goes all the way from Long Beach to San Clemente.
From Long Beach to San Diego:
1. Take Long Beach Passport Bus from Downtown to Cal State Long Beach.
2. At Cal State Long Beach Take OCTA Bus #50 from CSULB toward Orange.
3. Get off at Anaheim Metrolink/Amtrak Station
4. Board Amtrak Pacific Surfliner Train to San Diego.
-Takes 2 buses and 1 train. About 1 hour on buses including connection time. Please refer to timetables.
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