| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Canistota Elementary School | 421 4TH AVE | 126 | K-6 |
| Canistota High School | 421 4TH AVE | 99 | 9-12 |
| Canistota Junior High School | 421 4TH AVE | 43 | 7-8 |
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