| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Beadle Elementary School | 1214 MULBERRY | 366 | K-5 |
| Lincoln Elementary School | 815 LOCUST | - | K-5 |
| Stewart Elementary School | 208 W 21ST ST | 297 | PK-5 |
| Webster Elementary School | 317 E 7TH ST | - | K-5 |
| Yankton High School | 1801 SUMMIT | 1,039 | 9-12 |
| Yankton Middle School | 2000 MULBERRY | 702 | 6-8 |
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