| A Fantis Parochial School | 195 STATE ST | 88 | PK-8 |
| Abraham Lincoln High School | 2800 OCEAN PKY | 2,541 | 9-12 |
| Academy For College Prep & Career Exploration School | 911 FLATBUSH AVE | 599 | 6-12 |
| Academy For Conservation And The Environment School | 6565 FLATLANDS AVE | 130 | 9-10 |
| Academy For Environmental Leadership School | 400 IRVING AVE | 373 | 9-12 |
| Academy For Health Careers School | 355 PARK PL | - | - |
| Academy For Young Writers School | 183 S 3RD ST | 375 | 9-12 |
| Academy Of Business And Community Development School | 141 MACON ST | 206 | 6-10 |
| Academy Of Hospitality And Tourism School | 911 FLATBUSH AVE | 317 | 9-12 |
| Academy Of Innovative Technology School | 999 JAMAICA AVE | 207 | 9-10 |
| Academy Of Urban Planning School | 400 IRVING AVE | 470 | 9-12 |
| Ach Tov V'Chesed School | 123 S 8TH ST - STE 7C | - | - |
| Achievement First Apollo Charter School | 350 LINWOOD ST | - | - |
| Achievement First Aspire Charter School | 1137 HERKIMER ST | - | - |
| Achievement First Brownsville Charter School | 2021 BERGEN ST | 248 | K-2 |
| Achievement First Bushwick Charter School | 125 COVERT ST | 657 | K-7 |
| Achievement First Crown Heights Charter School | 790 E NEW YORK AVE | 826 | K-9 |
| Achievement First East New York Charter School | 557 PENNSYLVANIA AVE | 507 | K-5 |
| Achievement First Endeavor Charter School | 510 WAVERLY AVE | - | - |
| Acorn Community High School | 561 GRAND AVE | 697 | 9-12 |
| Acorn High For Social Justice School | 1396 BROADWAY | - | - |
| Adelphi Academy School | 8515 RIDGE BLVD | 98 | PK-12 |
| Agnes Y Humphrey For Leadership School | 27 HUNTINGTON ST | 166 | 4-10 |
| Ahaba Ve Ahva Cong And Yeshiva School | 2001 E 7TH ST | 101 | PK-3 |
| Ahi Ezer Yeshiva School | 2433 OCEAN PKY | 387 | PK-8 |
| Al Madrasa Al Islamiya School | 5224 3RD AVE | 201 | PK-9 |
| Al-Madinah School | 383 3RD AVE | 760 | PK-9 |
| Al-Noor School | 675 4TH AVE | 650 | PK-12 |
| All City Leadership Secondary School | 1474 GATES AVE | 251 | 6-12 |
| America Come Back To God Christian Academy School | 822 DUMONT AVE | 143 | PK-6 |
| Andries Hudde School | 2500 NOSTRAND AVE | 1,163 | 6-8 |
| Ark Christian Academy School | 1710 EASTERN PKWY | 61 | PK-2 |
| Arts And Media Preparatory Academy School | 905 WINTHROP ST | 210 | 9-11 |
| Aspirations Diploma Plus High School | 1495 HERKIMER ST | 272 | 9-12 |
| Automotive High School | 50 BEDFORD AVE | 987 | 9-12 |
| B'Not Rachel High For Girls School | 1950 E 7TH ST | 48 | 9-11 |
| Bais Brocho Of Karlin Stolin School | 4314 10TH AVE | 497 | PK-12 |
| Bais Esther School | 1353 50TH ST | 694 | PK-12 |
| Bais Meir School | 9517 AVE J | 245 | 8-12 |
| Bais Rochel Of Boro Park School | 5301 14TH AVE | 1,560 | K-12 |
| Bais Sarah-Educ For Girls School | 6101 16TH AVE | 597 | PK-8 |
| Bais Tziporah School | 1449 39TH ST | 509 | K-12 |
| Bais Uvi Grieding School | 2555 NOSTRAND AVE-6TH FL | - | - |
| Bais Yaakov Academy School | 1213 ELM AVE | 786 | PK-12 |
| Bais Yaakov D'Chassidei Gur School | 1975 51ST ST | 335 | K-8 |
| Bais Yaakov D'Gur High School | 1975 51ST ST | 97 | 9-12 |
| Bais Yaakov Faigeh Nberger Of Adas Yereim School | 1169 43RD ST | 363 | PK-11 |
| Bais Yaakov Of 18th Avenue School | 4419 18TH AVE | 311 | PK-8 |
| Bais Yaakov Of Midwood School | 1192 E 31ST ST | - | - |
| Bais Yakov Of Khal Adas Yereim School | 563 BEDFORD AVE | 353 | PK-11 |
| Bais Yitzchak School | 1413 45TH ST | 229 | PK-8 |
| Barkai Yeshiva School | 5302 21ST AVE | 85 | PK-3 |
| Bas Melech For Girls School | 44-21 15TH AVE | 41 | K-2 |
| Battalion Christian Academy School | 661 LINDEN BLVD | 254 | PK-5 |
| Bay Ridge Christian Academy School | 6324 7TH AVE | 181 | PK-8 |
| Bay Ridge Preparatory School | 8101 RIDGE BLVD | 157 | K-12 |
| Be'Er Miriam School | 11 HARRISON AVE | - | - |
| Be'Ikvei Hatzoin School | 31 DIVISION AVE | 250 | K-11 |
| Becec Inc School | 1981 HOMECREST AVE | - | - |
| Bedford Academy High School | 1119 BEDFORD AVE | 343 | 9-12 |
| Bedford Preparatory Charter School | 460 MARCUS GARVEY BLVD | - | - |
| Bedford Stuyvesant Collegiate Charter School | 800 GATES AVE-4TH FL | 139 | 5-6 |
| Bedford Stuyvesant New Beginnings Charter School | 82 LEWIS AVE | - | - |
| Bedford Stuyvesant Prep High School | 832 MARCY AVE | 112 | 9-12 |
| Beer Hagolah Institute High School | 671 LOUISIANA AVE | 356 | 7-12 |
| Beer Hagolah Institute School | 671 LOUISIANA AVE | 381 | PK-6 |
| Beginning With Children Charter School | 11 BARTLETT ST | 447 | K-8 |
| Believe Northside Charter High School | 424 LEONARD ST - 4TH FL | 94 | 9 |
| Believe Southside Charter High School | 424 LEONARD ST - 4TH FL | 93 | 9 |
| Benjamin Banneker Academy School | 71-77 CLINTON AVE | 830 | 9-12 |
| Berkeley-Carroll School | 181 LINCOLN PL | 796 | PK-12 |
| Bet Yaakov Ateret Torah School | 2166 CONEY ISLAND AVE | 351 | PK-8 |
| Bet Yakov Ateret Torah High School | 2166 CONEY ISLAND AVE | 114 | 9-12 |
| Beth Chana And High For Girls School | 620 BEDFORD AVE | 408 | K-12 |
| Beth Jacob For Girls School | 85 PARKVILLE AVE | 847 | PK-12 |
| Beth Jacob High School | 4420 15TH AVE | 860 | 9-12 |
| Beth Jacob Of Boro Park School | 1371 46TH ST | 1,878 | K-8 |
| Beth Rachel For Girls School | 82 LEE AVE | 4,131 | PK-12 |
| Beth Rivkah High School | 310 CROWN ST | 487 | 9-12 |
| Beth Rivkah School | 310 CROWN ST | 993 | K-8 |
| Bethel Elementary School | 457 GRAND AVE | 113 | PK-8 |
| Bible Speaks Church Of Christ Academy (The) School | 5205 FOSTER AVE | - | - |
| Big Apple Institute Inc School | 2937 86TH ST | 1,211 | PK-7 |
| Bishop Ford Center Catholic High School | 500 19TH ST | 931 | 9-12 |
| Bishop Kearney High School | 2202 60TH ST | 1,138 | 9-12 |
| Bishop Loughlin Memorial High School | 357 CLERMONT AVE | 866 | 9-12 |
| Blessed Sacrament School | 187 EUCLID AVE | 315 | PK-8 |
| Bnei Shimon Yisroel Of Sopron School | 18 WARSOFF PL | 373 | PK-12 |
| Bnos Chayil School | 345 HEWES ST | 498 | PK-9 |
| Bnos Chomesh Academy School | 1451 PRESIDENT ST | - | - |
| Bnos Israel Of East Flatbush School | 1629 E 15TH ST | 367 | K-12 |
| Bnos Margulia Viznitz School | 1824 53RD ST | 146 | PK-3 |
| Bnos Menachem, Inc School | 739 E NEW YORK AVE | 223 | PK-8 |
| Bnos Spinka Boys School | 799 KENT AVE | - | - |
| Bnos Square Of Williamsburg School | 382 WILLOUGHBY AVE | - | - |
| Bnos Yakov For Girls School | 62-68 HARRISON AVE | 1,040 | PK-12 |
| Bnos Yakov Of Boro Park School | 1402 40TH ST | 694 | PK-12 |
| Bnos Yerushalayim School | 600 MCDONALD AVE | 850 | PK-12 |
| Bnos Zion Of Bobov School | 5000 14TH AVE | 1,223 | PK-12 |
| Bnot Chaya Academy School | 2020 CONEY ISLAND AVE | - | - |