| Alpha Elementary School | 900 Stadium Road | 422 | K-6 |
| Apollo Elementary Community Day School | 28198 Avenue 14 | 13 | 1-6 |
| Berenda Elementary School | 26820 Club Drive | 548 | K-6 |
| Centennial Independent Study School | 12150 Road 36 | 13 | 1-12 |
| Cesar Chavez Elementary School | 2600 East Pecan | 430 | K-6 |
| Dixieland Elementary School | 18440 Road 19 | 224 | K-8 |
| Enterprise Secondary School | 28261 Avenue 14 | 38 | 6-12 |
| Ezequiel Tafoya Alvarado Academy School | 26247 Ellis Street | 200 | K-6 |
| Furman (Duane E.) High (Alternative) School | 955 West Pecan Avenue | 55 | 9-12 |
| George Washington Elementary School | 509 South Street | 405 | K-6 |
| Golden Valley Adult School | 12150 Road 36 | - | 9-12 |
| Gould Educational Center School | 28123 Avenue 14 | 163 | K-12 |
| Howard Elementary School | 13878 Road 21 1/2 | 377 | K-8 |
| Independence Continuation High School | 12150 Road 36 | 8 | 10-12 |
| Jack G. Desmond Middle School | 26490 Martin Street | 764 | 7-8 |
| James Madison Elementary School | 109 Stadium Road | 385 | K-6 |
| James Monroe Elementary School | 1819 North Lake Street | 469 | K-6 |
| John Adams Elementary School | 1822 National Avenue | 516 | K-6 |
| John J. Pershing Elementary School | 1505 East Ellis Street | 462 | K-6 |
| Juvenile Hall (Endeavor/Voyager Secondary) School | 28261 Avenue 14 | 29 | 7-12 |
| La Vina Elementary School | 8594 Road 23 | 215 | K-8 |
| Liberty High School | 12220 Road 36 | 371 | 9-12 |
| Lincoln Community Day School | 12150 Road 36 | 7 | 7-12 |
| Lincoln Elementary School | 650 Liberty Lane | 532 | K-6 |
| Madera Adult School | 955 West Pecan Avenue | - | - |
| Madera County Independent Academy School | 28198 Avenue 14 | 74 | K-12 |
| Madera County Opportunity School | 28123 Avenue 14 | 4 | 7-12 |
| Madera High School | 200 South L Street | 1,394 | 9-12 |
| Madera South High School | 755 West Pecan Avenue | 1,869 | 9-12 |
| Martin Luther King Junior Middle School | 601 Lilly Street | 628 | 7-8 |
| Millview Elementary School | 1609 Clinton Street | 452 | K-6 |
| Mountain Vista High (Continuation) School | 1901 Clinton Street | 70 | 9-12 |
| Nishimoto Elementary School | 26460 Martin Street | 517 | K-6 |
| Parkwood Elementary School | 1150 East Pecan Avenue | 421 | K-6 |
| Pioneer Technical Center School | 1025 South Madera Avenue | 66 | 9-12 |
| Ranchos Middle School | 12455 Road 35 1/2 | 306 | 7-8 |
| Sherman Thomas Charter High School | 26303 Adell | 3 | 9-12 |
| Sherman Thomas Charter School | 1902 Howard Road | 147 | K-8 |
| Sierra View Elementary School | 16436 Paula Road | 217 | K-6 |
| Sierra Vista Elementary School | 917 Olive Avenue | 442 | K-6 |
| Thomas Jefferson Middle School | 1407 Sunset Avenue | 881 | 7-8 |
| Valley Teen Ranch Community Day School | 10535 Road 35 | 8 | 7-12 |
| Webster Elementary School | 36477 Ruth Avenue | 442 | K-6 |