During the pieces of Irene moving through the Raleigh area it exposed a leak in one of my large skylights (along with toppling a large poplar tree).
I had to have the roof repaired along with new skylight flashing installed and then have a expert sheet rock/drywall repair/installer come in and fix the interior damage.
If you want a recommendation for a roofer: Dave's Roof Repair -
Roof Repair Raleigh Cary Apex North Carolina
The guy is honest, family guy, fast, extremely knowledgeable, stands behind his work, and a good friend of mine. He is the only guy I will let up on the roof for repairs.
He also does all the roofing work for my extended family.