| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Anza Elementary School | 1005 South Anza Street | 277 | K-5 |
| Blossom Valley Elementary School | 9863 Oakmont Terrace | 322 | K-5 |
| Bostonia Elementary School | 1390 East Broadway | 361 | K-5 |
| Cajon Valley Community Day School | 165 Roanoke Road | 15 | 6-8 |
| Cajon Valley Home School | 1384 Broadway | 45 | K-8 |
| Cajon Valley Middle School | 550 Park Avenue | 683 | 6-8 |
| Chaparral High School | 1600 North Cuyamaca Street | 90 | 9-12 |
| Chase Avenue Elementary School | 195 East Chase Avenue | 336 | K-5 |
| Crest Elementary School | 2000 Suncrest Boulevard | 89 | K-5 |
| Dehesa Elementary School | 4612 Dehesa Road | 111 | K-6 |
| Eje Elementary Academy Charter School | 851 South Johnson Avenue | 157 | K-5 |
| Eje Middle Academy School | 851 South Johnson Avenue | 62 | 6-8 |
| El Cajon Adult Center School | 1035 East Madison Avenue | - | - |
| El Cajon Valley High School | 1035 East Madison Avenue | 1,248 | 9-12 |
| Emerald Middle School | 1221 South Emerald Avenue | 752 | 6-8 |
| Fletcher Hills Elementary School | 2330 Center Place | 357 | K-5 |
| Flying Hills Elementary School | 1251 Finch Street | 367 | K-6 |
| Foothills Adult Education Center School | 1550 Melody Lane | - | - |
| Fuerte Elementary School | 11625 Fuerte Drive | 388 | K-5 |
| Granite Hills High School | 1719 East Madison Avenue | 1,827 | 9-12 |
| Greenfield Middle School | 1495 Greenfield Drive | 701 | 6-8 |
| Grossmont Middle College High School | 8800 Grossmont College Drive | 35 | 11-12 |
| Hillsdale Middle School | 1301 Brabham Street | 1,467 | 6-8 |
| Jamacha Elementary School | 2962 Jamul Drive | 292 | K-5 |
| Johnson Elementary School | 500 West Madison | 322 | K-5 |
| Lexington Elementary School | 533 South First Street | 331 | K-5 |
| Liberty Charter School | 1012 East Bradley Avenue | 162 | K-12 |
| Literacy First Charter School | 799 East Washington Avenue | 500 | K-8 |
| Los Coches Creek Middle School | 9669 Dunbar Lane | 788 | 6-8 |
| Madison Avenue Elementary School | 1615 East Madison Avenue | 298 | K-5 |
| Magnolia Elementary School | 650 Greenfield Drive | 294 | K-5 |
| Meridian Elementary School | 651 South Third Street | 356 | K-5 |
| Montgomery Middle School | 1570 Melody Lane | 743 | 6-8 |
| Naranca Elementary School | 1030 Naranca Avenue | 382 | K-5 |
| Pepper Drive Elementary School | 1935 Marlinda Way | 531 | K-8 |
| Phoenix High School | 1600 North Cuyamaca Street | 25 | 9-12 |
| Rancho San Diego Elementary School | 12151 Calle Albara | 322 | K-5 |
| Rios Elementary School | 14314 Rios Canyon Road | 200 | K-5 |
| Sevick Special Education School | 1609 East Madison Avenue | - | - |
| Valhalla High School | 1725 Hillsdale Road | 1,510 | 9-12 |
| Viking Center School | 1751 Hillsdale Road | 19 | 9-12 |
| Vista Grande Elementary School | 1908 Vista Grande Road | 371 | K-5 |
| W. D. Hall Elementary School | 1376 Pepper Drive | 271 | K-5 |
| Work Training Center School | 230 Jamacha Road | - | 9-12 |
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