| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| East Elementary School | 211 9th Ave SE | 285 | PK-2 |
| Independence Christian Academy School | 700 13th Street NE | 29 | PK-12 |
| Independence High School | 500 5th Ave SE | 532 | 9-12 |
| Independence Middle School | 1301 1st St W | 323 | 6-8 |
| Independence Success Center School | 2349 Jamestown Ave | 9 | 9-12 |
| Perry #1 Elementary School | 1726 Fairbank Amish Blvd | 27 | K-8 |
| St Johns School | 314 3rd Street NE | 119 | PK-8 |
| West Elementary School | 1103 1st St W | 235 | 3-5 |
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