Here's the list of cities in the top 100 by state:
12 in California: Los Angeles (2nd), San Francisco (3rd), San Diego (6th), San Jose (8th), Sacramento (26th), Santa Rosa (32nd), Oxnard (39th), Riverside (63rd), Fresno (73rd), Stockton (82nd), Modesto (93rd), Bakersfield (95th)
Average ranking: 43.5
7 in Florida: Miami (9th), Orlando (18th), Tampa (30th), Cape Coral (46th), Jacksonville (62nd), North Port (65th), Palm Bay (72nd)
Average ranking: 43.1
6 in Texas: Houston (11th), Dallas (14th), Austin (17th), San Antonio (28th), El Paso (49th), McAllen (83rd)
Average ranking: 33.7
5 in Pennsylvania: Philadelphia (20th), Pittsburgh (53rd), Harrisburg (76th), Allentown (77th), Lancaster (78th)
Average ranking: 60.8
5 in New York: New York (1st), Albany (61st), Rochester (68th), Buffalo (80th), Syracuse (97th)
Average ranking: 61.4
5 in Ohio: Columbus (40th), Cincinnati (58th), Cleveland (70th), Akron (92nd), Dayton (100th)
Average ranking: 72.0
4 in North Carolina: Raleigh (25th), Charlotte (34th), Durham (44th), Greensboro (87th)
Average ranking: 47.5
4 in Tennessee: Nashville (27th), Knoxville (84th), Memphis (85th), Chattanooga (99th)
Average ranking: 73.8
3 in Utah: Provo (24th), Salt Lake City (29th), Ogden (57th)
Average ranking: 36.7
3 in Connecticut: Bridgeport (35th), New Haven (48th), Hartford (51st)
Average ranking: 44.7
3 in Massachusetts: Boston (10th), Worcester (67th), Springfield (90th)
Average ranking: 55.7
3 in South Carolina: Charleston (45th), Columbia (81st), Greenville (88th)
Average ranking: 71.3
2 in Colorado: Denver (16th), Colorado Springs (37th)
Average ranking: 26.5
2 in Arizona: Phoenix (13th), Tucson (41st)
Average ranking: 27.0
2 in Missouri: St. Louis (38th), Kansas City (43rd)
Average ranking: 40.5
2 in Wisconsin: Madison (33rd), Milwaukee (59th)
Average ranking: 46.0
2 in Virginia: Virginia Beach (42nd), Richmond (50th)
Average ranking: 46.0
2 in Washington: Seattle (15th), Spokane (89th)
Average ranking: 52.0
2 in Georgia: Atlanta (12th), Augusta (98th)
Average ranking: 55.0
2 in Michigan: Detroit (55th), Grand Rapids (75th)
Average ranking: 65.0
2 in Kentucky: Lexington (66th), Louisville (69th)
Average ranking: 67.5
2 in Oklahoma: Oklahoma City (64th), Tulsa (86th)
Average ranking: 75.0
2 in Arkansas: Fayetteville (74th), Little Rock (96th)
Average ranking: 85.0
1 in Illinois: Chicago (4th)
1 in District of Columbia: Washington DC (5th)
1 in Nevada: Las Vegas (7th)
1 in Hawaii: Honolulu (19th)
1 in Minnesota: Minneapolis (21st)
1 in Oregon: Portland (22nd)
1 in Maryland: Baltimore (23rd)
1 in Louisiana: New Orleans (31st)
1 in Nebraska: Omaha (36th)
1 in Maine: Portland (47th)
1 in Indiana: Indianapolis (52nd)
1 in New Mexico: Albuquerque (54th)
1 in Idaho: Boise (56th)
1 in Iowa: Des Moines (60th)
1 in Rhode Island: Providence (71st)
1 in Kansas: Wichita (79th)
1 in Alabama: Birmingham (91st)
1 in Mississippi: Jackson (94th)
The first tiebreaker is the average ranking of the cities listed within each state. The second tiebreaker is the highest-ranking top city in each state.
Despite the criticism of the methodology by many in this topic, I do have to credit the makers of this list for not including oversized "boomburbs" like Mesa, AZ; Plano, TX; Aurora, CO; or even Naperville, IL; because their size and stature are wholly dependent upon the larger, vastly more important cities nearby.